#AlphaFold

4 posts tagged with "AlphaFold"

Biology's Secret Weapon: Physics-Based Benchmarks for Training RL Agents

2025-12-03•16 min read

#reinforcement learning #biological benchmarks #protein design #rna design #computational biology #machine learning #alphafold #drug discovery

Why biological systems offer the ideal training ground for reinforcement learning: automated verification through physics, not human judgment. From protein design with AlphaFold to RNA folding with ViennaRNA, biology provides the verifiable inverse problems that RL needs at scale.

The Dark Matter of Biology: What Machine Learning Reveals About the Invisible Proteome

2025-12-02•20 min read

#machine learning #computational biology #protein structure #rna #alphafold #intrinsic disorder

Machine learning is illuminating biology's hidden half: intrinsically disordered proteins and RNA structures that traditional methods could never capture. But can we trust what we're seeing?

Foundation Models Are Rewriting the Rules of Biology

2024-10-30T11:35:02Z•24 min read

#ai #machine learning #biology #bioinformatics #foundation models #alphafold #drug discovery #dark matter biology #rna #benchmarks #metagenomics

Foundation models trained on biological data are transforming protein structure prediction, genomics, drug discovery, and pathology. Learn how machine learning benchmarks in 2024 are revealing biology's dark matter through RNA analysis and metagenomic discovery.

From Structure to Function: Leveraging AlphaFold's Evoformer Embeddings for Downstream AI

2024-10-24T19:27:41+01:00•11 min read

#alphafold #protein-embeddings #machine-learning #computational-biology #evoformer #structural-biology

AlphaFold solved protein folding, but its hidden embeddings may be even more valuable, powering everything from drug design to disease prediction.