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Paper-reported evidence

Benchmarking genomic foundation models for binary classification of gene fusion breakpoints from DNA sequences

2026 · Peer-reviewed · journal full text in PMC

Paper-reported results. The values below come from this source, not an independent rewire.it run.

Open primary paper →DOI: 10.1186/s13040-026-00553-1

Numeric result checked against Table 2 in primary full-text XML; journal/source: BioData Mining.

1 verified numerical rows · source checked 2026-09-15

Paper-reportedIndependent paper evaluation

Nucleotide Transformer + NN (middle)

gene fusion breakpoint classification

Reported score
0.994
Metric
ROC AUC
Dataset / split
gene fusion breakpoint DNA sequences · full test set

middle embedding with neural-network classifier

Table 2, NT / NN (middle) row, ROC AUC columnVerify at source →